Table 2. USDA High Consequence Pathogens
Phylogeny[1]   NCBI Name[2] Threat List Name or Synonym Host Accession
Prion   Bovine spongiform encephalopathy prion Bovine spongiform encephalopathy agent A S55629        
Fungi Ascomycota Coccidioides immitis   A          
  Chytridiomycota ----- Synchytrium endobioticum P          
Eukaryota Oomycetes ----- Peronosclerospora philippinensis P          
    ----- Sclerophthora rayssiae var. zeae P          
Bacteria Alphaproteobacteria Brucella melitensis   A NC_003317 NC_003318      
    Brucella melitensis biovar Abortus Brucella abortus A          
    Brucella melitensis biovar Suis Brucella suis A NC_004310 NC_004311      
    Candidatus Liberibacter africanus Liberobacter africanus P          
    Candidatus Liberibacter asiaticus Liberobacter asiaticus P          
    Ehrlichia ruminantium Cowdria ruminantium A          
  Betaproteobacteria Burkholderia mallei   A NC_002970*        
    Burkholderia pseudomallei   A NC_002930* http://www.sanger.ac.uk/Projects/B_pseudomallei/
    Ralstonia solanacearum (race 3, biovar 2) P          
  Gammaproteobacteria Coxiella burnetii   A NC_002971        
    Francisella tularensis   A          
    Xanthomonas oryzae pv. oryzicola   P          
    Xylella fastidiosa (citrus variegated chlorosis strain) P NC_002488 NC_004556      
  Firmicutes Bacillus anthracis   A NC_003997 NC_003995* NC_004352* NC_002925* NC_004126*
    Clostridium botulinum Botulinum neurotoxin producing species of Clostridium 94 A NC_003223* http://www.sanger.ac.uk/Projects/C_botulinum/
    Clostridium baratii Botulinum neurotoxin producing species of Clostridium 94 A          
    Clostridium butyricum Botulinum neurotoxin producing species of Clostridium 94 A          
    Mycoplasma capricolum subsp. capripneumoniae   A          
    Mycoplasma mycoides   A          
DNA Virus Asfarviridae African swine fever virus   A NC_001659        
  Herpesviridae Alcelaphine herpesvirus 1 Malignant catarrhal fever virus (exotic) A NC_002531        
  Poxviridae Camelpox virus   A NC_003391        
    Goatpox virus   A NC_004003        
    Lumpy skin disease virus   A NC_003027        
    Sheeppox virus   A NC_004002        
- Strand RNA Virus Bunyaviridae Akabane virus   A          
    Rift Valley fever virus   A NC_002043 NC_002044 NC_002045    
  Orthomyxoviridae Avian influenza virus (highly pathogenic) (H5N1) A          
  Paramyxoviridae Hendra virus   A NC_001906        
    Menangle virus   A          
    Newcastle disease virus Newcastle disease virus (VVND) A          
    Nipah virus   A NC_002728        
    Peste-des-petits-ruminants virus   A          
    Rinderpest virus   A          
  Rhabdoviridae Vesicular stomatitis virus (exotic) A NC_001560        
+ Strand RNA Virus Flaviviridae Classical swine fever virus   A NC_002657        
    Japanese encephalitis virus   A NC_001437        
  Picornaviridae Foot-and-mouth disease virus   A NC_002554 NC_003992 NC_004004 NC_004915  
    Swine vesicular disease virus   A          
  Togaviridae Eastern equine encephalitis virus   A NC_003899        
    Venezuelan equine encephalitis virus   A NC_001449        
dsRNA Virus Reoviridae African horse sickness virus   A          
    Bluetongue virus (exotic) A          
Toxin (protein) Bacteria, Low G+C gram positive, Clostridia Botulinum toxin   A AF488749 AB088207 AB082519    
    Clostridium perfringens epsilon toxin   A M95206 M80837      
  Bacteria, Low G+C gram positive, Bacilli Staphylococcal enterotoxin B   A M11118        
  Bacteria, gammaproteobactera Shigatoxin   A AB035142 AB035143 AF461169 AF461170  
Toxin (small molecule) Fungi, ascomycota T-2 toxin   A