Table 7B. NIAID Priority Pathogens Category B
Phylogeny[1] NCBI Name[2] Agency Name or Synonym Accession
Fungi Microsporidia Encephalitozoon cuniculi Microsporidia 69 NC_003242        
    Encephalitozoon hellem Microsporidia 69          
    Encephalitozoon intestinalis Microsporidia 69          
    Enterocytozoon bieneusi Microsporidia 69          
Eukaryota Alveolata Cryptosporidium parvum       http://www.parvum.mic.vcu.edu/
    Cyclospora cayetanensis            
    Toxoplasma gondii       http://www.sanger.ac.uk/Projects/T_gondii/
  Diplomonadida Giardia intestinalis            
  Entamoebidae Entamoeba histolytica       http://www.sanger.ac.uk/Projects/E_histolytica/    
Bacteria Alphaproteobacteria Brucella melitensis Brucella species 105 NC_003317 NC_003318      
    Brucella melitensis biovar Abortus Brucella species 105          
    Brucella melitensis biovar Canis Brucella species 105          
    Brucella melitensis biovar Suis Brucella species 105 NC_004310 NC_004311      
    Rickettsia prowazekii Typhus fever NC_000963        
  Betaproteobacteria Burkholderia mallei   NC_002970*      
    Burkholderia pseudomallei   NC_002930* http://www.sanger.ac.uk/Projects/B_pseudomallei/    
  Epsilonproteobacteria Campylobacter jejuni   NC_002163        
  Gammaproteobacteria Coxiella burnetii   NC_002971        
    Escherichia coli   NC_004431 NC_000913      
    Escherichia coli O157:H7   NC_002695 NC_002655      
    Salmonella typhi Salmonella NC_003198* http://www.sanger.ac.uk/Projects/S_typhi/
    Shigella boydii Shigella species 111          
    Shigella dysenteriae Shigella species 111 NC_004510* http://www.sanger.ac.uk/Projects/Escherichia_Shigella/
    Shigella flexneri Shigella species 111 NC_004337 NC_004741      
    Shigella sonnei Shigella species 111 NC_004511* http://www.sanger.ac.uk/Projects/Escherichia_Shigella/
    Vibrio cholerae Pathogenic Vibrios 133 NC_002505 NC_002506      
    Vibrio cholerae O139 Pathogenic Vibrios 133          
    Vibrio mimicus Pathogenic Vibrios 133          
    Vibrio parahaemolyticus Pathogenic Vibrios 133 NC_004603 NC_004605      
    Vibrio vulnificus Pathogenic Vibrios 133 NC_004459 NC_004460 NC_005139 NC_005140  
    Yersinia enterocolitica   NC_003222* http://www.sanger.ac.uk/Projects/Y_enterocolitica/
  Firmicutes Listeria monocytogenes   NC_003210        
  Chlamydia Chlamydophila psittaci Chlamydia psittaci (Psittacosis)        
- Strand RNA Virus Bunyaviridae California encephalitis virus            
    La Crosse virus   NC_004108 NC_004109 NC_004110    
+ Strand RNA Virus Caliciviridae Norwalk virus Caliciviruses NC_001959        
  Flaviviridae Japanese encephalitis virus   NC_001437        
    Kyasanur forest disease virus            
    West Nile virus   NC_001563        
  Picornaviridae Hepatitis A virus   NC_001489        
  Togaviridae Eastern equine encephalitis virus EEE NC_003899        
    Venezuelan equine encephalitis virus VEE NC_001449        
    Western equine encephalomyelitis virus WEE NC_003908        
Toxin (protein) Bacteria, Low G+C gram positive, Clostridia Clostridium perfringens epsilon toxin   M95206 M80837      
  Bacteria, Low G+C gram positive, Bacilli Staphylococcal enterotoxin B   M11118        
  Plant, embryophyta Ricin            
Table 7C. NIAID Priority Pathogens Category C
Phylogeny[3] NCBI Name[4] Agency Name or Synonym Accession
Fungi Ascomycota Coccidioides immitis            
  Coccidioides posadasii            
Bacteria Alphaproteobacteria Rickettsia conorii Other Rickettsias 69 NC_003103        
    Rickettsia rickettsii Other Rickettsias 69 NZ_AADJ01000001      
    Rickettsia typhi Other Rickettsias 69          
  Actinobacteria Mycobacterium tuberculosis   NC_002755 NC_000962      
- Strand RNA Virus Bunyaviridae Crimean-Congo hemorrhagic fever virus   NC_005301 NC_005300 NC_005302    
  Orthomyxoviridae Influenza A virus   NC_004905 NC_004518 NC_002016    
    Influenza B virus   NC_004791 NC_004784 NC_002204    
    Influenza C virus            
  Rhabdoviridae Rabies virus   NC_001542        
+ Strand RNA Virus Coronaviridae SARS coronavirus   NC_004718        
  Flaviviridae Tick-borne encephalitis virus   NC_001672        
    Yellow fever virus   NC_002031        
  Togaviridae Chikungunya virus   NC_004162        

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[1]
decker:
Organism is the agent itself(bacteria, virus, fungi, etc. and
Toxin is the product with the phylogeny of the producing organism.
Toxins have their own line, even though the organism may or may not have its own line
[2]
decker:
Best names in current curation. If NCBI gives a different name than LT, the NCBI name is used here. Some of the names here do not exist on NCBI
[3]
decker:
Organism is the agent itself(bacteria, virus, fungi, etc. and
Toxin is the product with the phylogeny of the producing organism.
Toxins have their own line, even though the organism may or may not have its own line
[4]
decker:
Best names in current curation. If NCBI gives a different name than LT, the NCBI name is used here. Some of the names here do not exist on NCBI