Table 6. Food- and Waterborne Pathogens              
Phylogeny[1]   NCBI Name[2] Threat List Name or Synonym Accession          
Eukaryota Alveolata Cryptosporidium parvum       http://www.parvum.mic.vcu.edu/  
    Cyclospora cayetanensis              
    Toxoplasma gondii       http://www.sanger.ac.uk/Projects/T_gondii/
  Diplomonadida Giardia intestinalis Giardia lamblia            
Bacteria Epsilonproteobacteria Campylobacter jejuni Campylobacter NC_002163          
  Gammaproteobacteria Escherichia coli   NC_004431 NC_000913        
    Escherichia coli O157:H7   NC_002695 NC_002655        
    Salmonella typhimurium Salmonella (nontyphoid) 110 NC_003197          
    Salmonella enteritidis Salmonella (nontyphoid) 110 NC_002962          
    Shigella boydii Shigella 111            
    Shigella dysenteriae Shigella 111 NC_004510* http://www.sanger.ac.uk/Projects/Escherichia_Shigella/
    Shigella flexneri Shigella 111 NC_004337 NC_004741        
    Shigella sonnei Shigella 111 NC_004511* http://www.sanger.ac.uk/Projects/Escherichia_Shigella/
    Vibrio mimicus Vibrio (noncholera) 133            
    Vibrio parahaemolyticus Vibrio (noncholera) 133            
    Vibrio vulnificus Vibrio (noncholera) 133 NC_004603 NC_004605        
    Yersinia enterocolitica   NC_003222* http://www.sanger.ac.uk/Projects/Y_enterocolitica/  
  Firmicutes Bacillus cereus              
    Listeria monocytogenes   NC_003210          
    Staphylococcus aureus Staphylococccal food poisoning 134 NC_002745 NC_002758 NC_003923      
    Streptococcus pyogenes Streptococci 135 NC_002737 NC_003485 NC_004070 NC_004606    
    Clostridium perfringens   NC_003366          
+ Strand RNA Virus Astroviridae Human astrovirus Astrovirus NC_001943          
  Caliciviridae Norwalk virus Norwalk-like viruses NC_001959          
  Picornaviridae Hepatitis A virus   NC_001489          
dsRNA Virus Reoviridae Rotavirus Rotavirus            
Toxin (protein) Bacteria, Low G+C gram positive, Bacilli Staphylococcal enterotoxin A Staphylococccal food poisoning 134 M18970          
    Staphylococcal enterotoxin B Staphylococccal food poisoning 134 M11118          

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[1]
decker:
Organism is the agent itself(bacteria, virus, fungi, etc. and
Toxin is the product with the phylogeny of the producing organism.
Toxins have their own line, even though the organism may or may not have its own line
[2]
decker:
Best names in current curation. If NCBI gives a different name than LT, the NCBI name is used here. Some of the names here do not exist on NCBI